Protein Data Bank Entries - Bernhard Rupp |
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Description of entry (unlinked entries are on hold until publication) |
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2FVH |
Crystal Structure of Rv1848, a Urease Gamma Subunit UreA (Urea amidohydrolase), from Mycobacterium Tuberculosis. Bursey, E.H., Yu, M., Segelke, B.W., Lekin, T., Rupp, B., Kim, C.Y., Rho, B.S., Terwilliger, T.C., Hung, L.-W. In review. |
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2J9N |
Operator-assisted harvesting of protein crystals using a universal micromanipulation robot. R. Viola, P. Carman, J. Walsh, E. Miller, M. Benning, D. Frankel, A. McPherson, B. Cudney and B. Rupp. J. Appl. Crystallogr. 40(4):539-545 (2007) |
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1YNL |
Co-crystal structures of NC6.8 Fab identify key interactions for high potency sweetener recognition: Implications for the design of synthetic sweeteners. K. Gokulan, S. Khare, D. Ronning, S.D. Linthicum, J.C. Sacchettini, and B. Rupp. Structure of NC6.8-TES complex. Biochemistry 44: 9889-9898 (2005) |
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1YNK |
Co-crystal structures of NC6.8 Fab identify key interactions for high potency sweetener recognition: Implications for the design of synthetic sweeteners. K. Gokulan, S. Khare, D. Ronning, S.D. Linthicum, J.C. Sacchettini, and B. Rupp. Structure of NC6.8-SC45647 complex. Biochemistry 44: 9889-9898 (2005) |
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Rv2607 |
Crystal structure of a putative pyridoxine 5'-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis. J.-D. Pédelacq, B.-S. Rho, G.S. Waldo, C.-Y. Kim, T.P. Lekin, B.W. Segelke, B. Rupp, L.-W. Hung, S.-I. Kim, and T.C. Terwilliger. Proteins: Structure, Folding and Design 62(3):563-569 (2006) |
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1E1H |
The Botulinum neurotoxin A protease crystal structure in a substrate bound state: Evidence for Non-Canonical Zinc Protease Activity. Segelke BW, Knapp M, Kadhkodayan S, Balhorn R, Rupp B. Proceedings of the National Academy of Sciences U.S.A. 101: 6888-6893 (2004) |
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Rv3465 |
Mycobacterium tuberculosis rmlC epimerase (Rv3465): a promising drug target structure in the rhamnose pathway. KA Kantardjieff, C-Y Kim, C Naranjo, GS Waldo, T Lekin, BW Segelke, A Zemla, MS Park, TC Terwilliger and B Rupp. Acta Crystallogr D60: 895-902 (2004, Journal Cover |
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Rv1379 |
Structure of pyrR (Rv1379) from Mycobacterium tuberculosis: A persistence gene and protein drug target. C. Vasquez, K.A. Kantardjieff, B-S. Rho, T. Lekin, C.Y. Kim, B.W. Segelke, T. Terwilliger, B. Rupp. Acta Crystallogr. D, in press. |
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1HKV |
Crystal Structure of Mycobacterium tuberculosis Diaminopimelate Decarboxylase, an Essential Enzyme in Bacterial Lysine Biosynthesis (LysA,Rv1237). Kuppan Gokulan, Bernhard Rupp, Martin S. Pavelka, Jr., William R. Jacobs, Jr., and James C. Sacchettini J.Biol. Chem. 278(20):18588-18596 (2003) |
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1HKW |
Crystal Structure of Mycobacterium tuberculosis Diaminopimelate Decarboxylase, an Essential Enzyme in Bacterial Lysine Biosynthesis (lysA, Rv1237). Kuppan Gokulan, Bernhard Rupp, Martin S. Pavelka, Jr., William R. Jacobs, Jr., and James C. Sacchettini J.Biol. Chem. 278(20):18588-18596 (2003) |
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1MQ7 |
TB consortium target structure, solved at UCLA with LLNL data |
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1YK3 |
The crystal structure of Rv1347c, a putative antibiotic resistance protein from mycobacterium tuberculosis, reveals a GCN5-related fold and suggests an alternative function in siderophore biosynthesis. G.L. Card, C.A. Smith, B. Rupp, B.M. Schick & E.N. Baker. J. Biological Chem. 280(14): 13978-13986 (2005). JBC paper of the week, April 2005. |
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1GQA |
High resolution crystal structure of ferricytochrome c from Rhodobacter sphaeroides. L. Ramirez, H. Axelrod, S. Herron, B. Rupp, J. Allen and K. Kantardjieff. J. Chem. Cryst. 33:413-424 (2003) |
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1GS9 |
A new crystal form of Apoliporotein E4. J.Verderame, K.Kantardjieff, B.Segelke, K.Weisgraber and B.Rupp. (2001) |
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1EA8 |
ApoE3 lipoprotein mutant K146E. J.Verderame, K.Kantardjieff, C. Peters-Libeu, K.Weisgraber and B.Rupp. (2001) |
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1H7I |
ApoE3 lipoprotein mutant K146Q. J.Verderame, K.Kantardjieff, C. Peters-Libeu, K.Weisgraber and B.Rupp. (2001) |
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1UP5 |
New insights in the flexibility and domain librations in Calmodulin, M.Wilson and B.Rupp (2003), featured in Nature Cell Biology Reviews Poster |
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1HD7 |
Two Divalent Metal Ions in the Active Site of a New Crystal Form of Human Apurinic/Apyrimidinic Endonuclease, Ape1: Implications for the Catalytic Mechanism.. Beernink PT, Segelke BW, Hadi M., Erzberger JP, Wilson DM and Rupp B. J. Mol. Biol. 307(4):1023-1034 (2001) |
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1E9N |
Two Divalent Metal Ions in the Active Site of a New Crystal Form of Human Apurinic/Apyrimidinic Endonuclease, Ape1: Implications for the Catalytic Mechanism.. Beernink PT, Segelke BW, Hadi M., Erzberger JP, Wilson DM and Rupp B. J. Mol. Biol. 307(4):1023-1034 (2001) |
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1E1H |
Questions about the structure of the botulinum neurotoxin B light chain in complex with a target peptide. B. Rupp and B.Segelke. Nature Structural Biology 8 (8):663-664 (2001) |
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1GKB |
Concanavalin in a dimeric crystal form: revisiting structural accuracy and molecular flexibility. K.Kantardjieff, P.Höchtl, B.Segelke, F.-M. Tao and B.Rupp. Acta Crystallogr D58:735-743 (2002) |
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1DYQ |
Structural Basis for Abrogated Binding Between Staphylococcal Enterotoxin A Superantigen Vaccine and MHC-II alpha. Krupka HI, Segelke BW, Ulrich RG, Ringhofer S, Knapp M. and Rupp B. Protein Science 11:642-651 (2002) |
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1B68 |
Interaction of the N-Terminal Domain of Apolipoprotein E4 with Heparin. J. Dong, C. Peters-Libeu, K. H. Weisgraber, B. W. Segelke, B.Rupp, I. Capila, M.J. Hernáiz, L.A. LeBrun, R.J. Linhardt. Biochemistry 40(9):2826-34 (2001) |
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1OR3 |
Conformational flexibility in the Apolipoprotein E amino-terminal domain structure determined from three new crystal forms : Implication for lipid binding. Brent W. Segelke, M. Forstner, M.Knapp. S.Trakhanov, S.Parkin, Y.Newhouse, H.D.Bellamy, K.H.Weisgraber and B.Rupp. Protein Science 9(5):886-97 (2000) |
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1OR2 |
Conformational flexibility in the Apolipoprotein E amino-terminal domain structure determined from three new crystal forms : Implication for lipid binding. Brent W. Segelke, M. Forstner, M.Knapp. S.Trakhanov, S.Parkin, Y.Newhouse, H.D.Bellamy, K.H.Weisgraber and B.Rupp. Protein Science 9(5):886-97 (2000) |
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1BZ4 |
Conformational flexibility in the Apolipoprotein E amino-terminal domain structure determined from three new crystal forms : Implication for lipid binding. Brent W. Segelke, M. Forstner, M.Knapp. S.Trakhanov, S.Parkin, Y.Newhouse, H.D.Bellamy, K.H.Weisgraber and B.Rupp. Protein Science 9(5):886-97 (2000) |
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1A8D |
The crystal structure of the ganglioside-binding C-terminal fragment of Clostridium tetani: solving the phase problem with combined MAD and MIR. M.Knapp, B.Segelke and B.Rupp. (1998) |
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12E8 |
Crystal structure of a monoclonal 2E8 Fab antibody fragment specific to the low density lipoprotein receptor binding region of Apolipoprotein E refined at 1.9 Å. S. Trakhanov, S.Parkin, R.Raffai, R.Milne, Y.Newhouse, K. Weisgraber and B.Rupp, Acta Cryst D 55, 122-128 (1999). |
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1NFO |
Novel mechanism for defective receptor binding of apolipoptotein E2 in type-III hyperlipoproteinemia, Li-Ming Dong, Sean Parkin, B.Rupp, K.S.Arnold, Y.M.Newhouse, T.Simmons, T.L.Innerarity and K.H.Weisgraber, Nature Structural Biology 3(8), 718 (1996) |
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1NFN |
Novel mechanism for defective receptor binding of apolipoptotein E2 in type-III hyperlipoproteinemia, Li-Ming Dong, Sean Parkin, B.Rupp, K.S.Arnold, Y.M.Newhouse, T.Simmons, T.L.Innerarity and K.H.Weisgraber, Nature Structural Biology 3(8), 718 (1996) |
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1JBC |
Atomic resolution structure of Concanavalin A at 120K, Sean Parkin, B.Rupp and H.Hope, Acta Crystallogr. D52 , 1161 (1996) |
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1BPI |
Acta Crystallogr. D 52, 18-29 (1996) The Structure of Bovine Pancreatic Trypsin Inhibitor (BPTI) at 125K: Definition Of Carboxyl-Residues Glycine-57 And Alanine-58, S.Parkin, B.Rupp and H.Hope, |
